NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10024491

Scaffold Ga0209517_10024491


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10024491 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5369
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F036259Metagenome170Y
F100369Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100244912F036259GAGMFGAHHRGFAWKEIAKVLHMTRAVARATFWLEIKRSRSKSVKAQPPAIVIQDESDPDARKLGKPTGSR
Ga0209517_100244913F100369GGAGVPLDDTIRKRDQERLRNCFLTLGSSVQSREIRVVLQYLQALDVCDLLTQSSERQAEFASATLFRFGLDTLATGFWIACVATDDWLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPATHGDALVNVVRIGSALAQGKNWAQYLSTRMNELTHNFAVLIRELAGIDLESMAGKYMAAARQD
Ga0209517_100244918F003851GAGGMKHRKLAAASSRTIDEYAKRVLRALEEATRGRANTNDPIVEQLKQCPEAFKVGEILGKAFDSLKYAQDGSEIGDRYLPPAGVVIPPLV
Ga0209517_100244919F026325GGAGGMMTDPASAIKREVHQLVDLQIETLRQPSCLTTSDLLDYLGRSQKIAALYQELDQIRRASFKVQLRKAY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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