NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10027645

Scaffold Ga0209517_10027645


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10027645 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4893
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F004412Metagenome / Metatranscriptome439Y
F047830Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100276452F000208GAGGMRIRVTTRADLFEERKQQHIERGYRIEDERPSPVNGLCSFIAVSEIADSGGVGDLVAQALNGMAR
Ga0209517_100276457F004412AGGAMEPEPSNVEQALPPEQAAAKAAILAACDRLAEAGITFVAVRFDGAGDEGVNEDIKCYATEDYAYKETEVPNANFLYLQEHFETLVPYGYEDGCGGCGDVILNVKTRKITVERNDRFEDYTTSNYEV
Ga0209517_100276458F047830N/ALDDRRRPKTVPKLDGWATPEGWRRGLRPHAEEDSKPAERTTAGTDGQGDGHRNGNGASDHGASIVREIEQMEQALGKRMYRGLLKTLARVWNPKDIQDPAIQQKVLAHVHAAERGFRRLDAALERVGPEALTQILRSLKLQSIDRVDNLQTLREIVLALETAAEGRAVKQ
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