NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10076367

Scaffold Ga0209517_10076367


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10076367 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2351
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F011572Metagenome / Metatranscriptome289Y
F013506Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100763671F013506AGGAGGLNNQNLHFQFPAEPFQRWHVIEDRSLPGSLRFRHPCKPDEKPNPKENFGVSELSARLEHAGVEYIRIALGNDARSFDWAFLMLSGIPPGMEVPGDGRWYPVIPWVRDDGFYAVAMRKPMPYQDACHLFGFDIPEGKPSVPKRIKRDVARGLTSLFGELLETRQLNQWDFLHTVMLADGKTTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVKVGDLIQITGAMPNGQIKAN
Ga0209517_100763672F008540AGGAGGLRIFQPERALIAREIREENRRELAKILDQISKGRTSCLPSPVPPSLEAQFQMSIHRTREAVQRAKDVQTAHILRWLQS
Ga0209517_100763673F011572GGAGGMDTNRMFTNLFGNWLSAADKAAANTINYTKSTVMPAFSDLTQKATLATGKSLVQAGNKLINFCTRKSPLSHPR
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