NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209693_10006039

Scaffold Ga0209693_10006039


Overview

Basic Information
Taxon OID3300027855 Open in IMG/M
Scaffold IDGa0209693_10006039 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5547
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F013104Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0209693_1000603910F013104GGAGMSDSRPGKSIVLNWRGPLLAAGIFAAVFAILLVMAHQNESKTSDMGSSLREDPYGTSLLFDSYGRAGYQVKRGQDEDSLSDQDASTTTA
Ga0209693_100060397F002886AGGAGGLKSAFQKISRVSSLTGATRWYLSKDCLLAAKRVMYVVEYRRFYLRDLESIVVWPSRLWLWRLIVPGVLLAALGACLWQWVNSTSGAIFTGIGFAWVVLELALGPTAVSRVRATGVSVDLPLVKRTRRARKVLNAIDAAVCASRDLTMQPTVPIPSLQPAGVSVQTNSEAASAVPSLADASQTNGF
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