NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000001

Scaffold Ga0209166_10000001


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000001 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266628
Total Scaffold Genes1156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)831 (71.89%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000290Metagenome / Metatranscriptome1362Y
F000362Metagenome / Metatranscriptome1231Y
F000386Metagenome / Metatranscriptome1203Y
F000407Metagenome / Metatranscriptome1172Y
F000729Metagenome / Metatranscriptome917Y
F058310Metagenome / Metatranscriptome135Y
F067438Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_100000011073F000362GGAGMTHDPRQSLAVRVDPNEMVRYVHDLMMTRPSSTDDASMAVAERQWGGNSALARAAHLRWSALNRAFADARISPWTSQQRRNQIHVPAALIAAAGVAKLTMAEDEVVFDIPTLLDATLQLCEPVGHG
Ga0209166_100000011129F058310GGAMSDRAVADDTTMKLGLLMESVQVHQKLAEGQLDKLRAHTADLDAVVRDEIRRTMVDELQMLTAETTRATQVLQRLKGATAWRGTVLSLATAMLCSGIPFALARWALPSPADIATLRARREELAANIARLEQQGGRIDWRRCGEAKRLCVRVDRKAPSYGEKADYFVIEGY
Ga0209166_10000001221F067438N/AMVGTEESLRIEAGMAVLNGAKHRDAPNARNATGINSTTLSQNVYSKPGALFSVNRLSSAE
Ga0209166_10000001417F000729GAGGMMDFRARLAHQQAESAERRRMDLAEQSSRLKTAEERIRIWERVHEVILPKDPSHRLIDIIAANTGLTSSDVHEEQHRRAAQRAAV
Ga0209166_10000001765F000407GGAMSRLGTAPWILGSIILAGCSGSGYAVRPVPRIVADNVGQPVSVLQEAFGDPRKIDKTATKLVYVWFLPQKPKDGSPSGFQGCEMEVTVDARSQRILGYSLSNIGWSSCRDVQRSVRIAQR
Ga0209166_10000001767F000290GAGMGERAATLGVMSKSPNARRIGGPISWDQLSRPDTEQSQRFLAESLSLLLGDVLRSILSDASPAAAAEESSIERYRNLADSLADGESRRRTGAGLTRAGLAKRCVTWLKLLLTPSPNAPSTAPMREFVDALGLFPALFDSDPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0209166_10000001778F000386N/AMTETAPYLTLHVPPDEMVKYIQDLMKLPHGEIAAGTAMALAQRHWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDRIQVPAALVAAAGVAPLMIDNERAVFDIPALLDATLEFQPPAGQA
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