NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000045

Scaffold Ga0209166_10000045


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000045 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)168255
Total Scaffold Genes178 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)150 (84.27%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000381Metagenome / Metatranscriptome1210Y
F001114Metagenome / Metatranscriptome774Y
F001118Metagenome / Metatranscriptome773Y
F007481Metagenome / Metatranscriptome350Y
F018790Metagenome / Metatranscriptome233Y
F019713Metagenome / Metatranscriptome228Y
F020975Metagenome / Metatranscriptome221Y
F033529Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_10000045165F001118N/AMPVTIELHNLGDAQLCREIAASIEHALSDKRGEWRVSIAGSRASENWELRVGGLNGFERTYTLAGAAGEHQPEAIRRLILQLVPTRSS
Ga0209166_10000045166F007481GAGMRQVPNANHRLDEHILRALNKIKKPSTPEEITELLNRDLGPGDQPFQVREVATWLRNDEENVLCLYWLGNRLRR
Ga0209166_1000004535F018790AGGAGMAKLIEFYIPKNFRNTRVLGGQPQPGKVIEFCPQSKESGPARPARGVLGWLLAETESNHAVGRESPSHPGVA
Ga0209166_1000004537F019713AGGAGVPQAMFRTREEIISDILNWVCPECGGRMGGRRQEFKCQGECRTDWRDVWESQLAKPGKNTNSPWAWRKPYKVYATTETAREVPL
Ga0209166_1000004548F020975AGGAGVRGRNTTMPNARIRLFFVDAAFLAMTTFAVSAHAQLNPQSQTELTTPLEPLRPGVTASQIFDELLAHNALRAATLANYTAFRTYQVVDLKGKVHAEEIGQMEYRAPDQKKFVVTSERGSALVRHLALNALIASEIETTAGKQHHDSAISPANYSLDLLGEQQVGPYHCFVAQVVPKRKDKYLFEGKVWIDAEDYAVVRIDGHPARKLSFWIQRAEFVRQYQKIDNFWLPQRDMTFVDVRLYGKKVLTIDHHDYSVNLSVAIDGSIEKTQSLRF
Ga0209166_1000004556F033529GGAVLALLLASIVDFSLDNARFDLVVMTAALVIFISGGLRSP
Ga0209166_100000458F000381AGGAGGMCPACIESAAVMIAGAASTGGILAVCIGKVRRYFSPSGTSLFQKASENQEK
Ga0209166_1000004580F001114N/AMSDQRGFISPDQFRPDPYTQSRIAERTLNAAIVNAEISRSYEEYLEIFDEFYADRIEGSSDIREEPIRGKPAVRSLIFGFLVPLHAMAEVGGVSVSIRQTPIAGDVVDETHSAWTLELVATTGKVCTVSWRTFRKWNDSRVVLEHHYDHQQSGEPLRDGDLSLNVLGAPGGFHRW
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