NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000155

Scaffold Ga0209166_10000155


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000155 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90909
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (79.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000239Metagenome / Metatranscriptome1488Y
F003392Metagenome / Metatranscriptome489Y
F062122Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000015571F000239GGAGGMDESKRLAIKFLEKEVKTYRALALYLSKNDVKMHARVGAKKVVISPAFYKDRMKEAKKLVHELRKQY
Ga0209166_1000015575F062122AGGMNFLFRFLRKLFLPRLPKLEREDVASTAEFCNRLARLDEAALNTQDVWEWRISRQLTVHIHMFNSAKKVPRKFLRRAA
Ga0209166_1000015581F003392AGGGGGMQEYGFDSSDRSQTHTTDRNCDDKIQYFLRAEEQLFQQISSRAPLPGVLNGICIALDCQIGNVVSLISLPADDANELGAIAANAALFGLYTFCSESIVSDNDEILGSLEMYCSERRSPSADELQLIERAKCLAAIAIKRQKDADQQRKEGMGGERSLRAVGGPDSKN

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