NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000204

Scaffold Ga0209166_10000204


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000204 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76639
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (87.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F007725Metagenome / Metatranscriptome346Y
F056852Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000020412F000549GAGGMQPSPRKKVAQAYRIEGTLVLYRPAVRSTFKTERAPSRLEPRWSRVFGVPLFLRTLLRLVFVCPHWHRGPPITLRESIPRNLSGCQSVNRGGTHITCMDCGQRFAYNHKTRRLADFWGVHDAEALAGVRRRVEAFFSPLRGLAARIGRLKIRIPMSELVKSVHRLRILTKGQ
Ga0209166_1000020442F007725GGAGMRLRTVLSLATLFLTCFTIALFAQPLPPGNAASSLSSLPENQSVSGKISSVGDAAFTLSVSKENQKPQTVEFQVDDKTRVEGKLAVGAAALVEYRSDSGTNIAVRVVVTHRSGFSIY
Ga0209166_1000020447F056852GGAMGAYRALAQHAYFEFQKGDVAAAAQLARSLERLWDKAEDYGGDTALKKTHPDLFEEIDKAMDDFVLPLEQYKTKAPEASKVKAAFNAYLEKLKLAD
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Institute for Fundamental Biomedical Research
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