NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000401

Scaffold Ga0209166_10000401


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000401 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49699
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053166Metagenome141Y
F071061Metagenome / Metatranscriptome122Y
F087482Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000040127F087482AGTAGGMSPFSAPFFLGHLKRGLLLPKRVAALWEGTQWCKGGTGKAEAATLQDAGISLKQCPEKMSGRKRLAY
Ga0209166_1000040135F071061GGAGGVRNDLRCDCHICKVEDHLFDVLVEPPGNSRFLALAASSTVLAKFTNISELLAYLHSPRTGDYDWSDAGQTLAALVAARATARDAELIHSVLVLAFAPTIHRTYTEVCAWFRELEAADIGQQILAFFLELVASAATEKLAGILPIALSRSLRKASFRWAEREQRALLKRQDETQNGSDGSQRAAEPAFEHVSVLNDFLDYCTRQGLLSRFERAILIRFKVDGFTYKEIQNRHTVLTDQAVRLRVHRIMQRLQDAALSLSTRTEGTNHGSHAITQLPVKKSEGGLKHFSLKHSTDFLPISKSRGQLSLDSSRASSEGQ
Ga0209166_1000040149F053166AGGAGVSFIKKPPETVTREFQLEEPLANTLDSYAQFIGSTPDHVVASALRFVFWKDKEFDRIQKEQRKARAAARAAEVKKH
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Institute for Fundamental Biomedical Research
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