NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209166_10000452

Scaffold Ga0209166_10000452


Overview

Basic Information
Taxon OID3300027857 Open in IMG/M
Scaffold IDGa0209166_10000452 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45960
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (84.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F007046Metagenome / Metatranscriptome359Y
F015917Metagenome / Metatranscriptome251Y
F090756Metagenome / Metatranscriptome108Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209166_1000045230F000065GGAMTHIINKPILKLRRAPQPPLSHPGATPDSDRAKKPPLAEAPATDQELNPGDRVEGLGNFGKPTGEFGTVEQSNEEDAIVKWDDDGRKRLHQPSLKKV
Ga0209166_1000045246F007046GGAMRVMCAFKGRPSHVSFSLMPASETFRESRRSTRVPLKVAITIAGDVEGRSCEGETIMVNLHGSLIATAIGLSKGMRISIHVYLTDKRAAARVVYVDPQNPLHCGIELAKPQNIWGIPLPPNDWEERAPLESGH
Ga0209166_1000045255F090756AGAAGGMTARRKIKYLNAHRGCPGGPKCRHCTWDSLHISVEGPHAKYIKGHRGQYRGDIDGAIDDFLATLKLDARQLLRECAKESPALRQFHLNFG
Ga0209166_1000045256F102903GGAMHEGCTELKEARGRTVKKMTVVYDEEFCAVEVEFEDGYSMNVDIIPAVQIRPQFLYVATGDTEIRRNYKARVHTMGLNIEPFK
Ga0209166_1000045262F015917AGGAGMSATAKKVLVGNIEVTPLTSKQHRRLEERVKKRHEKLRKRYRELHGKTVDWVSYSFEDGSLYIAIRFKDKTDFSLRFSPQIVTDGIDLSDMSSGNFKLIREYYKRRDE
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