Basic Information | |
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Taxon OID | 3300027857 Open in IMG/M |
Scaffold ID | Ga0209166_10001252 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21815 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000696 | Metagenome / Metatranscriptome | 931 | Y |
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000739 | Metagenome / Metatranscriptome | 913 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209166_1000125216 | F000696 | GGA | MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVAQADTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGAMQDTQIRLRYAKAYPDFTDASSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF |
Ga0209166_1000125218 | F000739 | N/A | MNFTRFELWLKGVLAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMSATLRIAAAAALINSVIGVAAYLQKSPLPND |
Ga0209166_100012527 | F002853 | GGAG | MSRAQTQTMNLTDQQLANINAQNQQFLNQQQQTGNLLNSKFQSILNNPGLSAADKAAVTGQSQGAVASAFDSLQQSAANRLARTRNSAGFSALTDELARQKGIAEGNQAQQNQLAFTNTAFQRQMSALQGLSGLFGVDSNLLGRTLGIPSQLLNVRANASRPSPGFFTSLGAGLGSTLGALPSALF |
Ga0209166_100012528 | F000703 | N/A | MQIREYQQSDLAALRAIHAAQGFDYPLPDLRNPLFVTKLILSKSREESDSHQAEPPQEKIVGAALLRLTAEAYLLLDPKAGTPRQRWQWLLALHAATERDAWQRGLEDVHAWLPPPIASKFGKRIETLGWRRDDTWTPYCKRLACTATK |
Ga0209166_100012529 | F000781 | N/A | MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASINVQASNGWFDISIADPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPAAVTGGGSTGPTPLPSSGSGALPNGQLRGGNGFGINPGSRITRQTIL |
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