Scaffold Ga0209013_10038078

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209013_10038078

Scaffold Ga0209013_10038078

Overview

Basic Information
Taxon OID	3300027858 Open in IMG/M
Scaffold ID	Ga0209013_10038078 Open in IMG/M
Source Dataset Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3485
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location Name	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39192	Long. (^o)	-119.84578	Alt. (m)		Depth (m)	47
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209013_100380786	F006666	N/A	MNPKKHKEFKKNIAEEVGVHQSVVDDFIAFYYAKLRKHLSNLEYPRIQVDGLGTFILRKSKLEKAIKKNKSMLGNIAKRTYNGFAKSEDIQLNIDNMEKARELIEKNLTDKKIFKKNKNG

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