NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209503_10018463

Scaffold Ga0209503_10018463


Overview

Basic Information
Taxon OID3300027859 Open in IMG/M
Scaffold IDGa0209503_10018463 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3096
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F038672Metagenome165N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209503_100184632F038672N/AMNELDIILRKNRLDVMIIKASAEVEKTNNKVKKEGLEVLVDILDLIHDLQHEIRENYKEIAKLKYENAVAYKENAIIKTEFSTYKHNLKQAELKSHKNE
Ga0209503_100184636F030436N/AMNSTLKKIAEIIKDYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHQDFEKVIHDKVKEGFSVARATNEANVEVPEMYELRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0209503_100184637F056150N/AMDRKLIKKIENFIFWIGREYNVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDQVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
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