NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209701_10006981

Scaffold Ga0209701_10006981


Overview

Basic Information
Taxon OID3300027862 Open in IMG/M
Scaffold IDGa0209701_10006981 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7361
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019704Metagenome228Y
F040993Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209701_100069814F040993GAGGMATGSGPELRLRSFRPSGVDHLRSVKDGSENRWPKLLRTAQSLACALLLLVMLRVLEQGLLLGVAGAALVLLLQELVDPTPLFWSVPWEALQLVVSGRHRVNHLWLHRTQDLARESIGRSIKSDGFAMADGFVVTGVGRNKQLVQWTADSACRGMTQEREGASARRGCKAVRFLVAVWLMTGGLLAISIWRGIDLPGALLIALLSAAAGHALARPVEKMLANWLAIPAWQHEDARGFGLEVEPVEFPEWLWWQGGQGFIVRRIPGEEPRKE
Ga0209701_100069816F019704GGAGGMRRGVKVRELMQREGLSGEVVTLFYSGRTGIIHGDDGYDVTFNEESLVVGLAYGEVGIGLRVSYGIFFGTGAKVPTAINVRPASGSRTEITQDAENAVSARGGGFGVV
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