NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209701_10053135

Scaffold Ga0209701_10053135


Overview

Basic Information
Taxon OID3300027862 Open in IMG/M
Scaffold IDGa0209701_10053135 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2595
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004205Metagenome / Metatranscriptome448Y
F006201Metagenome / Metatranscriptome379Y
F078275Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209701_100531352F004205GGAGGMEAHVTSQSQSFRLVEKMEQASIHHGQEIRADLPKVRVLALAGGEQGQVLFCNLGPIRVREILNGGDDRPLPTNVRLEGLEVVASGTYDILNAFVSSNGDLRLVVDDQTRVVPVASVVGAAVV
Ga0209701_100531354F006201AGGAGGMNPEEKVLLTTAFEALGPERVTRGLKATGHSWSDCFLALAISGEPYALAREMEKAHRKKHVVGALIGVPVQVVNEVVRLWDHDEQSFRALVAEWLELSRAAVPTAPAATAWAQP
Ga0209701_100531356F078275AGGAGVAELKRHQDRESWVSWAIEFVRRGLWPADAITVHGPPASSADRFWGEAEAWDESGTWSYTIAFQTPARHGWDRRGVRLWDAEHPGTHFPVVRRSAMSHAQRRWLRIARRLAAPQWQTSGR
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