Scaffold Ga0207433_10497202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207433_10497202

Scaffold Ga0207433_10497202

Overview

Basic Information
Taxon OID	3300027863 Open in IMG/M
Scaffold ID	Ga0207433_10497202 Open in IMG/M
Source Dataset Name	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	722
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.611006	Long. (^o)	-110.440182	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025048	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207433_104972022	F025048	AGGA	MLNPTPIVDAIVTTLQAIPDLAAAMTVLDANGTPTCRISGFHYRLGVEHRLAEAIFKMPAPSMLLAWDGTQGGNFDGQTMWKHRFSLYFRMGNAVGLSEPMGYEELWWTVCNKPPTGSAVGIRYMNVYPGLDIMDTPSVAHALDEDLQDRFV

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