NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209755_10275811

Scaffold Ga0209755_10275811


Overview

Basic Information
Taxon OID3300027864 Open in IMG/M
Scaffold IDGa0209755_10275811 Open in IMG/M
Source Dataset NameCornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1646
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016537Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209755_102758113F016537AGGAGMSVCCECCVLSGRGLCDGLITRPEESCGRLSVVSVVCFQVEVSASG
Ga0209755_102758114F016537AGGAGMSVCCECCVLSGRGLCDGLITRPEELYGCLSVVSVVCCQVQVSASG
Ga0209755_102758116F016537AGGAGMSVCCECCVLSGRGLCDGLITRPEELYGCLSVVSVVCCQVEVCATG
Ga0209755_102758117F016537AGGAGMSVCCECCVLSGRGLCDGLITHPEESYRCVSVVSVVCCQVEVCATG
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