NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10000621

Scaffold Ga0209167_10000621


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10000621 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24483
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (91.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031402Metagenome / Metatranscriptome182Y
F046308Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_1000062111F031402AGGAMKLADIPPGSDIAYRSAAKLIADQVGFELETCRRLLGTEPDKVLELLATTPDWSLFLDDEDL
Ga0209167_1000062124F046308AGGAGVTTDQERKAEVLKFADGLRSAGVAKVTVSYYGDGDEGRAEPPQFQDAAENPVEESHLSGNLNIEILGDLLEGFAPESYEDGDGGFGTVVFDLETLTIRVEHNWYETVSHPDEPREI

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