NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10003822

Scaffold Ga0209167_10003822


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10003822 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7758
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000239Metagenome / Metatranscriptome1488Y
F038769Metagenome / Metatranscriptome165Y
F059154Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_1000382210F038769AGGCGGMIGFLDDQRRAQRLPIYLPVQVYGKLEGVPFSENTETINVSACGGLVPISAGVVRAQKLILTNLQTDQDLTCRVARLFRSEKGQMLAGLEFLQSAPGFWRSSPSAND
Ga0209167_100038223F000239AGGAGGMHDAKRQAVRFLEKEIKTYTALSLFLSKRGANKFQDAGANVVVIRPSFYKERMKEAKKLVHELRKPE
Ga0209167_100038227F059154GAGGVTQGIVTQQYSGVYCRACGEPISLPSRAEKALAAHQAEASDPTAEIRPVVFNLRCKACEKENFYGAKDVAVIQGAPRSARPRARAAASLLRPDLKLARTANA
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