Scaffold Ga0209167_10013685

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209167_10013685

Scaffold Ga0209167_10013685

Overview

Basic Information
Taxon OID	3300027867 Open in IMG/M
Scaffold ID	Ga0209167_10013685 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3845
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004373	Metagenome / Metatranscriptome	441	Y
F004412	Metagenome / Metatranscriptome	439	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_100136851	F004373	N/A	MRDGRPRVIEPRDTPAPSGFAAIGAFLFFGATMASLAAVSLVWRGTFLDRVWTLNPAAYRQLAPLGCIVGLLFLLLGMALAAAGIGWFRRRLWGWRLAVAIIATQVVGDIVNCIRGDWPHGGIGVVIAGALMLFLLRPIVKNAFA
Ga0209167_100136854	F004412	GGA	MQNQPSNAEQALPPEQAAAKAAILAECERLAEAGITFVAVHFDGSGDEGVNEDIKRYATEDNACEESEVQDGNFSHLQEHFETLVPYGYEIGCGGFGNVILNVKSRTIRVERNDRFEDYTTSNYEV

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