NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000023

Scaffold Ga0209579_10000023


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000023 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)471627
Total Scaffold Genes432 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)325 (75.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F000548Metagenome / Metatranscriptome1036Y
F003701Metagenome / Metatranscriptome473Y
F009834Metagenome / Metatranscriptome312Y
F036362Metagenome / Metatranscriptome170Y
F057528Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000023100F003701GAGMKNVCLLFRLALFCVLSFCLLLAGCAEKKKPVAPTPPAIRSQLPPASAEIVEHCVVVKQENANTVTCSCQLVTTVIDSRTGHTKLVCKRMKEEK
Ga0209579_10000023106F000175N/AVDENRKGFLLIAATILAARKLSQYEAGARIPATIIAITDAVMWAEKILSVIDDRWPPK
Ga0209579_10000023191F057528GGAGMRLSLSGGSAVLSKGPITPGTMGNITMMTVFGKVSAQVEFLHTGADGVPLAQAFRFLTMEDESLQRFTAAAKQMEEEGFSDAVPHPSGLSAPASETLGLLLHSVRRLAATLVASKS
Ga0209579_10000023230F000548N/AMPNESSTGPRWIGIPVRVCAMTFLFTLLSFAVALLLGILGTVVYSQVKHVAPNMTFAYRHVAFPFAITAGAIVMVLSIAMEIRNYRQRKTLAGIERVS
Ga0209579_10000023363F009834AGGAGGMNRIKSRFVNLISTGLAFLITLLATLLIVPGGASAKDHKPKGSNNQAQVVAHISFAGLSAVDMSMQKKLNDKYFLYVQHSKGQGVSIIDITKPAQAKDVGLLAWPDPAVSRKMNLSGDLAIIAENDAFPTQISSANDDLVLWDLSNPAAPRVVQKFSGVVKWLQDERNFIYVLNGDGLWVVSKPQERQPEQAGSSDSY
Ga0209579_1000002349F036362GAGMFDVWKFRPLNHFQCLILTLAALSIFGSAQSNSGTDKDKDKKEETQKAASGASSKFIKVEGKVRCDKPEPTYSIDVPDRPGHALVLTKRHCTWTEPMELMGSKTKDGVSVSFTEKMEASLHVHSFEVDTLDSGEKLTFQSQGQVLAEKGPVDITGRWSYMRGTGKFKGIKGGGTYEGKLGADDVVTLELEGVYDPSDMAGDKK
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