NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000036

Scaffold Ga0209579_10000036


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000036 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)313075
Total Scaffold Genes287 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)215 (74.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F000812Metagenome / Metatranscriptome881Y
F002139Metagenome / Metatranscriptome590Y
F003650Metagenome / Metatranscriptome475Y
F004964Metagenome / Metatranscriptome417Y
F006318Metagenome / Metatranscriptome376Y
F032347Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000036109F003650AGGMSWNRFVPQIAALAVVTICLCIAGGSFQPAQAQETQTPAQPTPAPPTTEDEKELFILNDSALPDTYPQAGYEVHFNARSGVTPLHWRLEKGALPPGIKLQDDGLLHGAAEREGEFQFTVSVTDSGKPQQAMQKVFVIHVRSALTLSWKSPAHVNGNRIEGSVEVSNTTPDDMDLTFVVKAIAPNGRATAIGYQHFPLKKGTVAKELPFGETLPHGGYIVEVEAVGEVPPRNAIYRVRMQTPAPLQVTVGP
Ga0209579_10000036124F002139AGGAMTNRVAFAPQDFQKMCKQAERDQESKKLVILMDRVKRQIAERKNSPQNPESPLSTVTGDSNLMRLPSRSALFER
Ga0209579_10000036152F004964AGGAGGMCPACLATAGIVIGSVVSTGGVAALVAKMIGKRKGEKNDSKMKEQ
Ga0209579_10000036204F006318AGGAGGMWRQPPIWEPQGTKFRPYSITTLVFFYIGKFFGRLFGRRH
Ga0209579_10000036224F000208GAGGMRIRVTTRADLLEERKQQHLERGYRIEDERPIPVNGLCSFVAVRELTASDGLSATQRA
Ga0209579_10000036258F032347GAGGVAPVMEFDTKNNILRGTLDGRMTGAILLDFYARAAKYMASRPPCHGILCFSKVTDFEVSTAEIHQVASFPPEFPAGYMRVLVTPRDFIYGLARMFQILTQQTRPELQVVRTMEEAYRLLEVSSPEFHPVDDIE
Ga0209579_1000003699F000812GGALSDASSNQAPDPKPRGWTVVAAGFLLLALALVVIYTTGHAFFSPLALVVVAAIGLAALLLQLRLRTDLRAPVRAPLWLNVLGLVFAIAAVFADRLHLTAFWMLITALGAVVCFGVSGVVVLHALRTRR
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