NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10001974

Scaffold Ga0209579_10001974


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10001974 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16261
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047255Metagenome / Metatranscriptome150Y
F092949Metagenome / Metatranscriptome107Y
F094192Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_1000197411F092949GGAVNTCGTVEFSSTSSAGSSQTDALWRAVGEAAGPVGEMTPLLEKVRDAAWKITPRDIEGLTADELYEAVLPVAFAAADEKRRRAHEAIDAS
Ga0209579_100019742F094192GGAGMSGLRPSVRMTAPDGREWELYAYRMRPQPEEGRFRRIRRLFRPRAQEWTVQAVSWAPYPIDIRWTTSSELRGQVLAQVEGQLAHGHHPVPRNAKLVL
Ga0209579_1000197422F047255GAGMEPAVAFRVREHEPPGLEVRINFGLMTGREVTRAEIDDLAHALRGFAPAFEIVSEERHEFGGDVEASLHQVVVAMPPSADGAVVEIVAAAEQWARACFDARHSDLTEL
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