Scaffold Ga0209023_10014219

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209023_10014219

Scaffold Ga0209023_10014219

Overview

Basic Information
Taxon OID	3300027870 Open in IMG/M
Scaffold ID	Ga0209023_10014219 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7229
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	42.285437	Long. (^o)	-81.355591	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001068	Metagenome / Metatranscriptome	787	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209023_100142195	F001068	AGGAG	MPTEPSILDELRGQYESARTSEHTHSDVEGFEQINKRLRHAYAWLDKAFSYLDGVKPPIAHRFDVGHGLVFENTKFGRGYVGQHERRIVGYPVLDEINIYYEIAADKPLTIEVGQGGVALAEKALDDAGLQYTCRRIEDHTGVVRKCVITVPPAIPAKVAFNVDYQTGIVTVPLVNVDRFDRVSLEFHSQHIDEAILEDLLKFILGRDQNFLRRAPLAGLHGTPRA

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