Scaffold Ga0209397_10161504

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209397_10161504

Scaffold Ga0209397_10161504

Overview

Basic Information
Taxon OID	3300027871 Open in IMG/M
Scaffold ID	Ga0209397_10161504 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1004
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.224	Long. (^o)	-82.304	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001844	Metagenome / Metatranscriptome	627	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209397_101615041	F001844	N/A	NWFRAFNDPLSSAATAGRWIAQLPSGDPIALQKEVLELIAEFPGARKDAGPGQVEALLRIDGRLEPIIAQLTQQYTQLYQKSTGVESRLWHSVFDLVKAFTAAYQIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSRWIPAQWREFHELYEFARMRGWQREQLVFGVGGFAKPGISFEQEYLKTLMLMRLDSGNFTPDQVEWVARQLDDWTPTLALTPPPSEGAPFFVDLTGTSGLRRRERAHAGGRVMFLDAAPVYGRIVERMRWLPEQDAETPNPGELPVREQRLLLMRLASLFGPDAIAQAPRAPRFAVETEVRVVIGLQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.