NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209814_10014119

Scaffold Ga0209814_10014119


Overview

Basic Information
Taxon OID3300027873 Open in IMG/M
Scaffold IDGa0209814_10014119 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3182
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015578Metagenome253Y
F078557Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209814_100141194F078557GGAGGMKLVYAVSQRANPKRPTARHVDNGNGKPLCGGNGREPFFWAPEEGEPTCKICMDLAMMVQDKPEEAGPRQTTGD
Ga0209814_100141195F015578GAGMNLKNAARMITLAVAAQVLGYAYALPQHLGELTWSAHAQFHHVLAWIWNVGLNIAIVALAWGPLQKRDGNALRLLVILFIFAQGGHFIASMVVPAGRPSEWWYDYALGAMLLIFAIGLGVARRALSMSGSN
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