NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10060042

Scaffold Ga0209465_10060042


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10060042 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1831
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009509Metagenome / Metatranscriptome316Y
F021696Metagenome217Y
F044699Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_100600421F021696GGAGGMSSVLKSTLFRLWLMGSAALIAMLTPGAAVAEPIIVIISSQHNLEYARRACSSVANPEGIAECNFVGDGRNLGRKLENEVRSRITTNARCQGVDVFRQNHPDYDGKINFDELADQMKQVHWTLFLEYNPGQTTHNWTLFLWTGGDVSGGELVPGGMVEGEGTVSQIADQICIVVTKRGANVH
Ga0209465_100600422F009509AGGMNWRRDLFRLWIVGSALFVIAVAFVCYSEIKSYAEVPWAKLEMCATIAFGIPLVVLILGWAFLGSAAERP
Ga0209465_100600423F044699GGGGGMIRIIYSLLLLVISICSMASVVWLLSFIGFELLLLAGACFIAFASSVTLAEEVVEWRRHRQLLPPAS

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