NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10000159

Scaffold Ga0209283_10000159


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10000159 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31418
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F012492Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209283_1000015914F012492GAGLGVEEEAQPKKSNSRRYIESLLGWNSEESSGGGVYQTALFTSLLEYVIVLFFGTWLIVEYFYNVYEQQYFGSWDPVFLVIVLMTASAYGFTRLVSAVRTQLRPSKKTTKPEDDY
Ga0209283_100001596F009132AGGMVKRKIVDSLPEDLTNLRNLVGVESILAHCAGVNYQVYVTESRLLVGKRFALDEKYMNVPTANINTLELITKSLLPPITFAILGAIGSFATWWVPEGGRLSLPDFPFDIMFLGSLGVFIASLVVIWWRIGVAVLRIGITGSKQPITVKLVSTSKAEAVFKALKG
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