Scaffold Ga0209283

Basic Information
Taxon OID	3300027875 Open in IMG/M
Scaffold ID	Ga0209283_10002399 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209283_10002399 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10478
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10478

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006466	Metagenome	372	Y
F012762	Metagenome	277	Y
F013280	Metagenome / Metatranscriptome	272	Y
F046293	Metagenome / Metatranscriptome	151	N
F065621	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209283_1000239911	F065621	GGA	LKVPRILPYLAGLIVLAFALGSLPRGTPGGSILFRSYWLLYLVYLGPVVILGVMVGLIIIIALNYRDLGAAIGFGMARRRRMRKRGSPYPTFIAMFMWALAIGVLIETKGSIFNPTHAANSTIAKIVGENATAPSLFQTGGFLPALSDLVQNAWFSLAFIGLLVVGGSLWSRASESR
Ga0209283_1000239913	F012762	AGGA	LHETKPKRVQTLPPTSFEDDPSLGTLDSFPTVLHARASFSFDINPESLQKALVSALASLRTSPKSREITLADRDGYSKGQIAFRLGIGNGDGFDILDSEEEERVFHRIENRGPLNTLDLAFYLHYSIGDGRRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIGIMIQELNVELTRNRYGEIELETVDIT
Ga0209283_100023992	F046293	N/A	MPKFMQSLGEENYHRLLAEAKARDVTVQALIRTIVVPDWLKIVPAGQASVQNTLAQPTSLLARTGILTEQTRRPFLNTTIGRART
Ga0209283_100023996	F006466	AGCAGG	MLGNRTAVLLASASMLLLIIWGKIASDIYRLPGSDSALLLFRFMLVIFLMEASTTALTYDSTMRLLDGKSDDISAAARLRVLEWARVQVFSLGKLMTAAFALSLGLLILGSLLSVSLNQLAFSGILVLAAVVAIFILLVYRREPED
Ga0209283_100023999	F013280	N/A	LNTVRLLFWSAVGYAVLLVLVRGIFPSESTPTISLTGIPLIVIVVMIARELAGKSTSPTVRRKITTTTGFRGSPVQFLSGQFRVAASASSSYFENVVRARLKELLIAKVVLETGLENETVRRLLSDPRQGPRLLEDEPLYRMLYGPTPSRGLARTSMIREAIELIGAWKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209283_10002399

Overview

Ecosystem & Geography

Associated Families

Sequences