NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10003394

Scaffold Ga0209283_10003394


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10003394 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8975
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007071Metagenome / Metatranscriptome358Y
F007642Metagenome347Y
F008127Metagenome338N

Sequences

Protein IDFamilyRBSSequence
Ga0209283_1000339411F007071N/AMSGLSLRLTEIRSFLLPVGQFVAWPIFFLLTSAISQEPAYFLALLLVLAADVFDKSTRSRGLFRDLVAGGATTFLALFLNDLDGVAIGAGVAVAATFRLVQKLN
Ga0209283_100033946F007642N/ALTAREAVTVPGKPFAEVLVEGELSPFEHETLYRILRKSFRIEHPSYTELSDEDLATRVNLTFHYPYVTTIFTDVLRENWRDLKELLRQVRYRRGRAGAAVTFTFIGEKNRLVFKSGVLEEKELSSAMDQIGHLTGILGQMLRPETMEKPLELVEAAYDKRSDRWHEFKGFSSTVRDESYVFDESVFRWLRS
Ga0209283_100033947F008127N/ALGELERSNWKSLRDGRNFDRIDPAIREVVSLLNKKGYQTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFTLYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHRLFSQMRDIIEDLPRAPNNGNAVLAGLFEKENLQTGLRIVKGQMKRFTRS
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