NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10118186

Scaffold Ga0209283_10118186


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10118186 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1745
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F025571Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209283_101181862F025571N/AMISTVRARMAGHHPVGHGKSAPTTPAGWVDYWTDYYNLSKQLRKASQESWNATREIWKRKLVQAKRIRCQKCIEIVKLWLRTYGYGPERRALRENISQRGKTKRTTF
Ga0209283_101181863F000611N/AMNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNVYQTVKEIREIKDIRTTATHTGFDGIQPTKKFENQMALGFSLLNCEHTTSENVIKQLSSIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSHLDGIFKSETLLAYAPFFKA
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