Scaffold Ga0209283_10204665

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209283_10204665

Scaffold Ga0209283_10204665

Overview

Basic Information
Taxon OID	3300027875 Open in IMG/M
Scaffold ID	Ga0209283_10204665 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1311
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005262	Metagenome / Metatranscriptome	406	Y
F104886	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209283_102046651	F104886	N/A	MIPYGGESLRGEPQDFRIPRTGDRDLAFRGWLLSHAEERGGSPGLTRGLDIDIYLTIRLRLVAHLCR
Ga0209283_102046652	F005262	AGGA	MRPGFSSLLAIISLATPLAGQAAPGHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKQMISHVQLAQYTGAGENSNLVILEFPNWAALDTYEAKLEEASQVVLHKPWSEATAGFAELRRLVRLEIYTPVHDPLRR

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