Scaffold Ga0209974_10014406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209974_10014406

Scaffold Ga0209974_10014406

Overview

Basic Information
Taxon OID	3300027876 Open in IMG/M
Scaffold ID	Ga0209974_10014406 Open in IMG/M
Source Dataset Name	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2631
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SM33	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location
Location Name	Joint Genome Institute, California, USA
Coordinates	Lat. (^o)	37.931388	Long. (^o)	-122.021761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008775	Metagenome / Metatranscriptome	328	Y
F028577	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209974_100144064	F028577	GGAGG	MRKFKIAIVERGKEALWRDYWINSGSKGTADAAPSELGRTEVVEATSLEEAIDAVQGRHPDCTVMLAGGEHHLA
Ga0209974_100144065	F008775	N/A	MPRIIFRDLPDVSAVERQLSLHARDRLLDDEVEELPYIIDEASLTLFGITERDTFYWALPDPVRAQYGRAEWEANFEALGQWSRDPNVQWHAFDLDLCCEEGSSLHCLEVFGRQLVCALHDLHPQAVLAFSDRKRPQAA

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