NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209169_10000881

Scaffold Ga0209169_10000881


Overview

Basic Information
Taxon OID3300027879 Open in IMG/M
Scaffold IDGa0209169_10000881 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18558
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004875Metagenome / Metatranscriptome420Y
F013683Metagenome / Metatranscriptome269Y
F015675Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0209169_1000088116F015675GGAGVLTNHGPDRNIEDLTDEEIYAAIRYLEPAETSTDERNDNNGVVISVCLYIALLWCLAFVWLYWR
Ga0209169_1000088118F004875AGGAMRAFSTFVLAILRAGALVSVILLLSGLGLAQQVATARATISFNFWAQGHEFQAGDYVFDDEVPGSIAIHREGTNSAIGVSVILYAIPQEKETPRVIFVLRDGKYFLFELWGVQGRYVVTAEFQHRGEASEQQRQVPLTIVESHDQ
Ga0209169_1000088120F013683AGGAMEFKEYDFTRNPVVQNENFFLESKCGSCGFSILASSIDELIEHEAAHRRQCRRLNSIA
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