NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209169_10002157

Scaffold Ga0209169_10002157


Overview

Basic Information
Taxon OID3300027879 Open in IMG/M
Scaffold IDGa0209169_10002157 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11923
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021585Metagenome / Metatranscriptome218Y
F039385Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209169_1000215711F039385AGGGGGMTNEQMTALENVRAAAVAAETTGLTEAEIWKAAVTGLVHPEVKSGRPPGNYNPISDGLDKPRSKAQHG
Ga0209169_100021578F021585GAGGMAEQSRSKRSHGDFRFRLRCTDHRRCQFVGERQILELIYLAAPLPGILNKLCMMIDVRIGDVVSTVSLPDEAENHFCSMTDSALQLGLESFSSSAILSPDRVFLGMLEIFGCDLRRPTIPENNLINRVPYLAALALQRPDPEDRVDRPAMKPKGRLIGPLEKPKFMN
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