NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209481_10029280

Scaffold Ga0209481_10029280


Overview

Basic Information
Taxon OID3300027880 Open in IMG/M
Scaffold IDGa0209481_10029280 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2482
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001231Metagenome / Metatranscriptome741Y
F008484Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0209481_100292803F008484N/AMTTFTDAELKLIRKLTVQPPMTVLKIKDACPTHSVCTPLPLFRLYKIDDDSFEAQWNGYHEPGVKQVFRFQNTVQLPI
Ga0209481_100292804F001231AGGAGGMVELRFRIRNNVFNSREVPSRRSTIRPLSLCLPSVEEAALLGEVDEDGRLVPRRGVFFTGNLRTGPVIEGFEDCALGEFVKAQLEALSQNGEPPARCEVHGLDPFLELTEPEQTERLRDLISVCEFRSNEFTPESAVRFLKESGFFDEYIIVGVKRGTGWRRSRCITTFEGRPADAATILGHLAEYFGKEQQDDKPHDDRHL
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