NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209481_10281660

Scaffold Ga0209481_10281660


Overview

Basic Information
Taxon OID3300027880 Open in IMG/M
Scaffold IDGa0209481_10281660 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003001Metagenome / Metatranscriptome514Y
F018748Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209481_102816601F018748AGGAGMTTHDWELLGKQLWTATSPPRQNTTTIGLMIVAVFLVGIGIGDILSKSKQANTNYAAVISRIAEAQ
Ga0209481_102816602F003001GGAMIRTAIASVTASFVLFGAWAVNLVSYHPATDLNPLAPLSALVDWK

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