Scaffold Ga0255055

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255055_10062293

Overview

Basic Information
Taxon OID	3300027881 Open in IMG/M
Scaffold ID	Ga0255055_10062293 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	2077
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	50.0528611	Long. (^o)	-123.8211389	Alt. (m)	Depth (m)	425
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008343	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255055_100622932	F008343	GAGG	MSTLKKAKLNNLSTLQSKLLFNYFDANKKKKAYTKLTIDLKDPAVTIVDANGGQVFTTCKGYNVHAQTKHKEYTTIDLKRLQEDHPKLYEEYKTKVVNSITLEVNAVKI

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