Scaffold Ga0209590

Basic Information
Taxon OID	3300027882 Open in IMG/M
Scaffold ID	Ga0209590_10000028 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209590_10000028 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26116
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26116

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F022171	Metagenome	215	N
F037658	Metagenome	167	N
F044399	Metagenome	154	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_1000002812	F002514	GGA	LRDRDVMNLLDQIELYVLSVEGKRVAQKDYWLFIYNSMKSGLLLTEVMEKHLQYKLEALGVKNRQP
Ga0209590_1000002818	F022171	AGGAGG	MADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFAQPGGFGFPMRPALDTSAVVETALTVILFLLSLISIYSLLGLRRRYSRLLAMAEKLGR
Ga0209590_1000002826	F044399	N/A	LVVEGAEYPERIYSNGNMVNFPLGQESIVSPSQVFPAKLLQSLTPRIILRGVLLAFFPWAPAYLFERADFWFGQTSNGYWYYQFSSTRLEAFVISFALGGILVAYLLRPRWAIIQVLLSASLVYVLFYFACPTYMVGPVWKSECYSFGPDGLAGVRLGTMMFSFGALPAIVRASYKEDKLNKRLRSWIAIFGAFITSVVTTWFPLTAWFSGVTYLAPLVPFQVALLFGVSEIAVGIQAAKMSRSILVATASGFTSALLLSGFLWPLLCSSCDRSLLFLTVPSWGFFALIGGILELGLPRKLSLGPLRHFNPRLEDIRRVGIAVVLLFSLWTLVSFDLWDPSVLYATSISPGPGQLTLGAPTYPYVAGYYNSTQYRICCVQIGVSFTKVDLRALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFVLPNGTRVVSGSSWETCDGNANCGGIFWEHLRYHAQQIIRPTNTSTPVYLRMMWHYDQPNWHADWYYNYTGQPWTKFGSFVPDFREGHYFDIGVVGVGNYPWAFAFFYQFGVASKTPVPGWSAQLLYPSFVHPDGSWRLMERANIIQGWHSYWKASYRWGGQPYNGVSALAYANDETIPLGILQLSYVGTGSLKDKTVLW
Ga0209590_100000288	F037658	AGG	MAATVGTSLDRPLIESIDAALSALGTSTRDSVLLYLRKRYSISLEETPQRMDEFLQALRALLGYGARVIEKLVIARLVETNEIPLAEARGRNLAEIVTLSSKGRNKARPTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209590_10000028

Overview

Ecosystem & Geography

Associated Families

Sequences