NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209713_10002051

Scaffold Ga0209713_10002051


Overview

Basic Information
Taxon OID3300027883 Open in IMG/M
Scaffold IDGa0209713_10002051 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12367
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8697Long. (o)8.1122Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023826Metagenome / Metatranscriptome208Y
F030109Metagenome / Metatranscriptome186Y
F090412Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209713_1000205113F023826N/AMSWSLFKKNILRKTNPINNPSLNINEVATIWADEYDAVVKRGKDLLNLESVQKGNKDLAKALFQIALLKGLATPPGVNFSLVNEFGNGVKAYWVGAQMNPFPIPLIPAPGTIQNIVVNSNIATNPGTWPMYPPLKPAKKQVIMVNMFILAATVHLFSVGGIIQTTSLYPSAPSPIPSPGVISWTAYLIPPNIPIPNINFPSSDGSEPPVLEQVVDDSVSTLTPNAPQYVDSDVDVLGTPILKDVINETIPDDVIDEELENILPDFISQLEMGGTKCE
Ga0209713_1000205118F090412N/AMKNSGLKNEAQVAKIFVSGSDALPQTNDSGVRLFKESDLTDGIISGKLTRPKYNTKELKKSVDTTIFELLPNDVTIGPAMVLRTIYQEALDRITELNALLERLNVTIGERDATIAELQSIIEQLRIELENEQLKANIASQQSTISNQQIGETTIDLQNAIQNSI
Ga0209713_100020514F030109AGAAGMSYIKAQLPERYELKKRIEANKDMWIPFYAKHGAYIGSSESIDYLTNEIKKYYDSKEN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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