NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209713_10064599

Scaffold Ga0209713_10064599


Overview

Basic Information
Taxon OID3300027883 Open in IMG/M
Scaffold IDGa0209713_10064599 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2483
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8697Long. (o)8.1122Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066233Metagenome / Metatranscriptome127N
F080617Metagenome / Metatranscriptome115N
F099229Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209713_100645992F080617N/AMSDNKLKWSLEKLFNTVGRNLAMNYYGFDSEYEVLSVIDEKTGEEVTDSDLGGTENYTATVKSKEPLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAVQLVGPEWKSGENTYRTLQSFEDKWGRSLDRNANDFKVNPDNWIELNNGSVVDKITGDSFPLMFNGLIDKTEVWNIARVDDDEWWDSLSDLDKERLSDNFS
Ga0209713_100645993F099229N/AMVMDNDIEKIVEIGKVLLNTPTLRSIYKDKFDINTIDFEFVEKTNSSQFTTNHEHYIFKVTLYTDISLNFDDRIKSGEIEGYDTIENELWEYGIDPFYLADIIIPEKILNIILPKGKGEPKVAIELLIIGDEGQVIWNDHMFGRPGFTN
Ga0209713_100645994F066233N/AMEIEKNIDDELKADAQEKGEIATKILDALVFSKFGGINYSMMIRRQRQNSYSSPRANPIYFEFDVDIDVDKTFEPSPTYDKKYEDYIYEIGEHIEKALRYVNLQDYMEEPMFTYVNDDLVENEVDRLENKLVLYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEYIGHPPIIDGDRQSTDTIEEREYFSCEDLYDIMSDLFDRSPLSLSYDGENYTCQ
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