NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209275_10028968

Scaffold Ga0209275_10028968


Overview

Basic Information
Taxon OID3300027884 Open in IMG/M
Scaffold IDGa0209275_10028968 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2544
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038326Metagenome / Metatranscriptome166Y
F083078Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209275_100289681F083078GGAGGMRLFLSNGIRERFCRARLAGGVLAVLLFTAFPLLASGNWPQDEVTRNFDKTLTLGAGQSVRIEHKFGEIKVHGESGREVKISAVIRAQASSRDEAESFAQKIQIEVQQTAQGITIRTIYPPEENKWFHISKHSSWSVNYDIAVPTDSPLDIRNSYGSVSIARVHAAVEVENGYGSLTVQDAGPARLTNSFGSIELTGAAGNSVVNNKNSSVQVS
Ga0209275_100289682F038326N/AMNITCEDRDRIFLDGTPAEWAALEAHSGNCSVCTEELRAWKAISTAAKEMRDYSDSPSLWPRIEQALTAEAARKKHRAEGWNWLSLGLGLSLGWQTAAAAALVLILTASAGWIYLHPPKSRPSPDLSLLKSSALAEVERTQAAYEQAIDKLAADAKAQLENPATPLEASYREKLLVLDSAINDLRAQAGMNPSNAHLRQQLLAMYQEKQQTLQDILEEKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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