NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209275_10183163

Scaffold Ga0209275_10183163


Overview

Basic Information
Taxon OID3300027884 Open in IMG/M
Scaffold IDGa0209275_10183163 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1125
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004095Metagenome / Metatranscriptome453Y
F026059Metagenome / Metatranscriptome199Y
F083948Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209275_101831631F083948N/ASLEHGSVSVGTSTSMSVHVNCIKVEPVSSERTQYEVADVSGTVQVAARKNDVNITVGGVSGVVQKTHPEGDSSLSTVVHEGQQATRQESTACGAPARPGSAGNGLNTKWLEIGGGVGAGVIVLCLLLCKGSGPSNVSPSTP
Ga0209275_101831632F004095AGGAGMSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKNLVAPAKAANLKEKTA
Ga0209275_101831633F026059AGGAGMTTPVILLPLSTPDGTPARKKRVLLLDSSQTKRDLRADVMRQLGIEVDCAADVLEARCWWRADLYNLVLINVAGE
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