Scaffold Ga0209450

Basic Information
Taxon OID	3300027885 Open in IMG/M
Scaffold ID	Ga0209450_10001266 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209450_10001266 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12702
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12702

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F034061	Metagenome	175	N
F070850	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209450_100012661	F034061	N/A	MCYEKLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLNPMMKADTVVESKRIGQVVSNSSNVDLALGAGKFAGIRVTIDPNTASFLNFYLSNFQIDIYTMQTPVEIFVYDMATLKLIDSFFYQSEAVEEFIGKTFRANRRKMDLAFVYESLYDTTRMVPKRGSCTDCGGNLRAVHVCPFVDAIGIELTTDGTNVLSSKSKKYTQGMSMVYNVNCDREAWLCSIAGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFSTSDPNDGMIAGRDIAVTRYS
Ga0209450_100012664	F008936	N/A	MASFDELVKQKIKLFETVPEEIATAAERTQRQAWRKIAPLLSEMDVDAQGNIAQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDEIAKKIDRTFQPDNVQKQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVIALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGEIYHRREIEAWGDGKNSAGINDIRNGTWAGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQRVPPSVIARAEAEGYATPPRPRGGAEALTA
Ga0209450_100012667	F070850	AGG	MTEELTQTTQSITPSTGVVLLAFGKPQYYWATYNLVFSIRKHNPNVRITVLFEDTGKALSHCPEIVDYVEQVGSIDAEDIYTNKKLDPGKVKINLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKQYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQTEAIYRTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIHGIDPALKTYTRNDGSEGGMIHFSMQRGLSFEKIVQNYYLQSYYGGAGFTPRFYIDWLDRMLNADFKAIGKRHIYLISRIAENKYADGKR
Ga0209450_100012668	F005050	N/A	MACVSYCDTSLLEHDLVVCNEYKLGGVSAIIVGACGTELVDPSDAVEVDALLLSGEARMISDIRFALPAGSPVTVDSPIGCGTAIRINEDRTATLYDANVTDGNSIFWNDVNNRRISWILAYMCDSGKVIYITAPVGITTSANFILPEQNNELQRYEVTFSWRNKNIPAQYDAPPGVF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209450_10001266

Overview

Ecosystem & Geography

Associated Families

Sequences