NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209450_10197197

Scaffold Ga0209450_10197197


Overview

Basic Information
Taxon OID3300027885 Open in IMG/M
Scaffold IDGa0209450_10197197 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021479Metagenome / Metatranscriptome218Y
F048104Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209450_101971971F021479N/AMIAAPLMDVGTDPLKMGMGGVALMADAPSATIWGVIASPKRVACVGVIDLIKYVAAQQVAPTCPKRMEFARHMVQLEFVKFMDVQGDYFSPECANIITKTRLFALQSMRMQW
Ga0209450_101971972F048104GAGMVGEDDFSNSKEEVASALDISVIEASHDLTIMDINDLPFGIIQEYVGMNNWEHAITLAAVCKSWRIAAEPHVAMIGIAPMEGGRQRKLNVTGFLSYLDEQVKFRLAESIYVPCALKTDKLFYSEVKMRCPQMTALIHDKWIKTDGNMEYVLEGVSRHACYRMYKHDTPNIPGVNAYIKYEWDKTMKVQLVSEGQFVQLFTNRRQNRIQTSFLRY
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