NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208980_10182778

Scaffold Ga0208980_10182778


Overview

Basic Information
Taxon OID3300027887 Open in IMG/M
Scaffold IDGa0208980_10182778 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location NameTwitchell Island, Sacramento and San Joaquin Delta, California, USA
CoordinatesLat. (o)38.107Long. (o)-121.6475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y
F076791Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208980_101827781F049375N/AMLSILIADQPLDLSDDFSVSLNLKSPLFNDVGDYSYPFKVPVTARNKAILGWKNRIAASQSIYETYEGSFRWNGIVLFKGQVRIKTAGEKTFEGILYINKGNFNYEVKDLMMNRVDLGLKEFASDQDAINYFNWSLTHFYPEVDFSMPKIGNLDYYDPPATNPELMAYNYVFPDGLLHKTTTDGTQRTILVPFLYLKYVLNKLAEIFGYRLEDEFFTSSTELSRLVIYHSVNISEVLFGLQQLYYCRFVPKVKVSEFIAGLEKWFNCSFHADSKQRVIRIVGNREVLLHS
Ga0208980_101827782F076791N/ANNPETGLYSTPTLISETGQELVIDPKTTKNLMINYPQVIEAINFARVPQRAVGKYVETPSATAQPVAPVVDPEFTASINRLNSLIEQGIPAFISFEHLRETTNRVNQIEAEVSK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.