NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10000243

Scaffold Ga0209380_10000243


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10000243 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37316
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (77.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F012243Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_1000024322F000238GAGMIPVRVLVVTFIGTLISFAVSLLVGIIGTVAVSALRHIHPNMTVAYRLIALPAAVVAGSMIFVLALAMEIRHYRQSRTLAALEGLIDTRG
Ga0209380_100002437F012243N/AMNLLLRYIPLVLLMLLLWVLVRRRAQQVCPFFFAYVAFGVAAGVARLAARLLAPLRPEVYYATYWITEAGYDLLGILVMYELLRTVLGNLTHAWWSRLIFPAVLIAGVGLSLARAHASPAQFERGPSYILAGEIAVRFVQVLVFAGLVTAVPLLGLRWRQYPFGIAAGFGFYATIALLTTTKFSDFGTGFTFLWRVTSLVAYSVAVLIWIWFFSSPQKAETPNPDVSAPSPGVLKQYLDVLRRMR
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