NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10022702

Scaffold Ga0209380_10022702


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10022702 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3545
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005654Metagenome / Metatranscriptome394Y
F008092Metagenome / Metatranscriptome339Y
F045437Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_100227021F005654N/AGQSFRETGKDREDPVLSRRRYRGIVERSAAMVQYTAKDFQLEVLDKLAEMQSLTESLEESWDSKLEAVKEQRLLKFDSRTLIALGAIALSVAGYVVQEARNTARQDSEIETTKARVVRLEQISAANTEGRIRMEVQLGELRDGQAEIKAMIAAHLIASKKLGAEK
Ga0209380_100227022F045437GGAGGVSDKELAALRVIDREFQHDVLEKLSRVEAKVEMLVGNGQPGRMTIAEGRIVELERNDVRRTVIERFVNAGTAVLISVAVALRGHWWK
Ga0209380_100227023F008092AGGAGMSTPSTTIITNLKGLTAPTANTLTDADTYGMDMPGMLALALMKADELKVCLAAIVNKTDSADPNLTTLNNVLASLV
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