NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10034378

Scaffold Ga0209628_10034378


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10034378 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4714
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014030Metagenome266Y
F064841Metagenome128Y
F081498Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_100343783F064841GAGGMLGPLQNRKSDLSVRNGVMLYKKLIRPMMDYACPAWRYAACSHVRRLQLLQSKYLNLALVPTDT
Ga0209628_100343786F081498AGGALSPILFNLYSKCLTKKALDGLGDFNTRGKIIQTVKYADELVLIAKEETVLQGTIDKLIII
Ga0209628_100343787F014030GGAMRIIAERTLEIDEELCVYFIDCQKSLERVNWTKLMQILKRTGIDWRERRLISKLYMDRRVKIRLD
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