NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10149156

Scaffold Ga0209628_10149156


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10149156 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2446
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057739Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_101491563F057739AGGTGGVFTARYGLSAYIKQIRFVFITEVESVYGAVRTECLYKTDTFGFYNRGEECLQRGTDWVLI
Ga0209628_101491564F057739GAGVFTARYGLGVYIKEIRLVFITEVESVYSAARTGCLYKRYTFGFYNRGGECLQRGTD
Ga0209628_101491565F057739AGGTGGVFTARYGLGAYIKHIRLVFITEVESVYSAVRTECLYKTDKFGFYNRDGECLQRGTDWVFI
Ga0209628_101491566F057739AGGTGGVFTARYGLSAYIKHIRLVFITEVESVYSAVRTECLYKTYTFGFYNRGGECLQRGTDWVLI
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